PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast10G085400.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 250aa    MW: 27263.9 Da    PI: 9.6406
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast10G085400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM146.51.4e-45161481128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdL.pkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                         lppGfrF+Ptdeelvv+yL++++ +++l+++  i++v+++ ++P+dL p     +e+e yfF+++++ky +g r+nrat +gyWkatgk+k
  Brast10G085400.1.p  16 LPPGFRFRPTDEELVVHYLRRRALSSPLPAAVDIPDVRLLAHDPSDLlP--PGWSEEERYFFTCKESKYVKGCRANRATGAGYWKATGKEK 104
                         79***************************9666**************43..34478999******************************** PP

                 NAM  91 evlsk......kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         +v ++         +vg+k++Lvfy+g+ap+g+ktdWvmheyrl
  Brast10G085400.1.p 105 PVAVSvpaakgAAVVVGMKRSLVFYRGKAPSGNKTDWVMHEYRL 148
                         ***998887665666***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.32E-5013178IPR003441NAC domain
PROSITE profilePS5100549.95216178IPR003441NAC domain
PfamPF023651.1E-2617148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010089Biological Processxylem development
GO:0010150Biological Processleaf senescence
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
METKESAVAA DASRRLPPGF RFRPTDEELV VHYLRRRALS SPLPAAVDIP DVRLLAHDPS  60
DLLPPGWSEE ERYFFTCKES KYVKGCRANR ATGAGYWKAT GKEKPVAVSV PAAKGAAVVV  120
GMKRSLVFYR GKAPSGNKTD WVMHEYRLAG AGLSPCRRAQ AAAANPEEGW VLCRVFRKKK  180
GAAAAAAADT GDIQDPVEED QSVRFIDFFA RAEDARRRPR AASPLSSSCV TDASAEHCRE  240
LQETTSRGR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-40101809170Stress-induced transcription factor NAC1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00507DAPTransfer from AT5G13180Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0919151e-152FP091915.1 Phyllostachys edulis cDNA clone: bphyem115l12, full insert sequence.
GenBankFP0991851e-152FP099185.1 Phyllostachys edulis cDNA clone: bphyem106m22, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003575526.11e-149PREDICTED: NAC domain-containing protein 83
SwissprotQ9FY934e-55NAC83_ARATH; NAC domain-containing protein 83
TrEMBLI1IIG71e-149I1IIG7_BRADI; Uncharacterized protein
STRINGBRADI4G07527.11e-149(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63173254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.17e-51NAC domain containing protein 83